2 PM – Intro To Python – Gamas

Today We Did

1. We reviewed last week homeworks.
2. We reviewed more details about PyVCF3 module.

Homework

1. Inside VCF_file_reader_example.py do the following
   1. Read some fields from the INFO column like this

      1. record.INFO['CLNSIG'][0] # this is to read CLNSIG field inside INFO column
         
         record.INFO['CLNDN'][0] # this is to read CLNDN field inside INFO column

   2. Count records that whose INFO has CLNSIG equal to Uncertain_significance
   3. Count records that whose INFO has CLNSIG equal to Likely_benign
   4. Count records that whose INFO has CLNDN equal to not_provided
2. Create Oct1_DictionaryHomework.py
   1. copy codes from page 92 to 96